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    LOC4337318 myb family transcription factor RLI1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337318, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337318
    Gene description
    myb family transcription factor RLI1-like
    Locus tag
    OSNPB_040665600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337318 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34492729..34496340, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33972875..33976410, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cell division protein FtsZ homolog 1, chloroplastic Neighboring gene uncharacterized LOC4337317 Neighboring gene uncharacterized LOC9269403 Neighboring gene zinc finger CCCH domain-containing protein 31-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb family transcription factor RLI1-like
    Names
    Os04g0665600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34492729..34496340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780784.3 → XP_015636270.1  myb family transcription factor RLI1-like

      UniProtKB/Swiss-Prot
      A0A0P0WG05, A0A345FZ89, A2XYN9, B9FD60, Q01MN4, Q0J995, Q7XPK2
      Conserved Domains (2) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:327 → 373
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. XM_015780785.3 → XP_015636271.1  myb family transcription factor RLI1-like

      UniProtKB/Swiss-Prot
      A0A0P0WG05, A0A345FZ89, A2XYN9, B9FD60, Q01MN4, Q0J995, Q7XPK2
      Conserved Domains (2) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:327 → 373
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. XM_026024808.2 → XP_025880593.1  myb family transcription factor RLI1-like

      UniProtKB/Swiss-Prot
      A0A0P0WG05, A0A345FZ89, A2XYN9, B9FD60, Q01MN4, Q0J995, Q7XPK2
      Conserved Domains (2) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:327 → 373
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    4. XM_015780786.3 → XP_015636272.1  myb family transcription factor RLI1-like

      UniProtKB/Swiss-Prot
      A0A0P0WG05, A0A345FZ89, A2XYN9, B9FD60, Q01MN4, Q0J995, Q7XPK2
      Conserved Domains (2) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:327 → 373
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    5. XM_015780783.3 → XP_015636269.1  myb family transcription factor RLI1-like

      UniProtKB/Swiss-Prot
      A0A0P0WG05, A0A345FZ89, A2XYN9, B9FD60, Q01MN4, Q0J995, Q7XPK2
      Conserved Domains (2) summary
      TIGR01557
      Location:241 → 297
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:327 → 373
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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