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    LOC4350881 acyl-coenzyme A oxidase 2, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350881, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350881
    Gene description
    acyl-coenzyme A oxidase 2, peroxisomal
    Locus tag
    OSNPB_110605500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 31.8), roots before flowering (RPKM 31.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25304127..25308249, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23354152..23358321, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene uncharacterized LOC4350880 Neighboring gene disease resistance protein PIK6-NP Neighboring gene uncharacterized LOC136353850

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables acyl-CoA oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acyl-coenzyme A oxidase 2, peroxisomal
    Names
    Os11g0605500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25304127..25308249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761002.3 → XP_015616488.1  acyl-coenzyme A oxidase 2, peroxisomal

      UniProtKB/TrEMBL
      B9FI80, Q2R1G8
      Conserved Domains (1) summary
      PLN02636
      Location:24 → 699
      PLN02636; acyl-coenzyme A oxidase
    Nucleotide Protein
    Heading Accession and Version

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