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    LOC4344644 lysine-specific histone demethylase 1 homolog 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344644, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344644
    Gene description
    lysine-specific histone demethylase 1 homolog 2-like
    Locus tag
    OSNPB_080143400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Hd18
    Expression
    Ubiquitous expression in flowers (RPKM 10.5), roots before flowering (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2397832..2401706, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2385549..2389289, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276952 Neighboring gene 4-coumarate--CoA ligase-like 3 Neighboring gene beta-glucuronosyltransferase GlcAT14B Neighboring gene phospholipase A1-Ibeta2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific histone demethylase 1 homolog 2
    Names
    Flavin-containing amine oxidase domain-containing protein 2
    LOC_Os08g04780
    P0025F03.17-1
    P0025F03.17-2
    P0473D02.39-1
    P0473D02.39-2
    Protein LSD1-LIKE 2
    heading date 18
    putative peroxisomal N1-acetyl-spermine/spermidine oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422907.1 → NP_001409836.1  lysine-specific histone demethylase 1 homolog 2

      Status: VALIDATED

      Source sequence(s)
      AK120532, AU183938, CI192470, CI221323, CI308372
      UniProtKB/Swiss-Prot
      B7F607, Q6YYZ0, Q6YYZ1
      UniProtKB/TrEMBL
      A0A146F8E4, A0A146F8H5, A0A146F8I4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2397832..2401706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YYZ1.1 GenPept UniProtKB/Swiss-Prot:Q6YYZ1

    Gene LinkOut

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