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    LOC4333000 proteasome subunit alpha type-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333000, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333000
    Gene description
    proteasome subunit alpha type-2-like
    Locus tag
    OSNPB_030387100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PAB1; OsPAB1; OsJ_11088
    Expression
    Ubiquitous expression in flower buds (RPKM 45.7), leaves after flowering (RPKM 39.9) and 6 other tissues See more
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    Genomic context

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    See LOC4333000 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15772174..15776722)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15420135..15424720)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332997 Neighboring gene serine carboxypeptidase 1 Neighboring gene uncharacterized LOC4332999 Neighboring gene formin-like protein 7 Neighboring gene uncharacterized LOC9271829

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Primary structural features of the 20S proteasome subunits of rice (Oryza sativa). Sassa H, et al. Gene, 2000 May 30. PMID 10854779
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-2
    Names
    20S proteasome alpha subunit B
    20S proteasome subunit alpha-2
    LOC_Os03g26970
    OSJNBb0058G04.11
    alpha 2 subunit of 20S proteasome
    NP_001389095.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402166.1 → NP_001389095.1  proteasome subunit alpha type-2

      Status: VALIDATED

      Source sequence(s)
      CF305452, CF319267, CF319268, CI563111
      UniProtKB/Swiss-Prot
      A2YVR7, B7E2Y8, O22539, Q10KF0, Q6AVF6, Q9LSU2
      UniProtKB/TrEMBL
      B8BB87

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15772174..15776722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10KF0.1 GenPept UniProtKB/Swiss-Prot:Q10KF0

    Gene LinkOut

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