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    LOC4334757 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334757, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334757
    Gene description
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
    Locus tag
    OSNPB_030844500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B'zeta
    Expression
    Ubiquitous expression in milk grains (RPKM 9.0), leaves after flowering (RPKM 8.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36471960..36476562)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35498832..35503553)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene PTI1-like tyrosine-protein kinase 1 Neighboring gene exosome complex component RRP41-like Neighboring gene GDSL esterase/lipase At3g48460 Neighboring gene ALBINO3-like protein 1, chloroplastic Neighboring gene uncharacterized LOC4334760

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform
    Names
    Os03g0844500
    putative protein phosphatase 2A B'zeta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36471960..36476562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308835.1 → XP_066164932.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform

      UniProtKB/TrEMBL
      A0A0P0W5X9, B8AN84, Q0DLV3, Q75LC7, Q8L6I6

    2. XM_015776775.3 → XP_015632261.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform

      UniProtKB/TrEMBL
      A0A0P0W5X9, B8AN84, Q0DLV3, Q75LC7, Q8L6I6
      Conserved Domains (2) summary
      pfam01603
      Location:91 → 494
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
      cl27532
      Location:37 → 103
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)

    3. XM_015776776.3 → XP_015632262.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform

      UniProtKB/TrEMBL
      A0A0P0W5X9, B8AN84, Q0DLV3, Q75LC7, Q8L6I6
      Conserved Domains (2) summary
      pfam01603
      Location:91 → 494
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
      cl27532
      Location:37 → 103
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)

    4. XM_015776774.3 → XP_015632260.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform

      UniProtKB/TrEMBL
      A0A0P0W5X9, B8AN84, Q0DLV3, Q75LC7, Q8L6I6
      Conserved Domains (2) summary
      pfam01603
      Location:91 → 494
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
      cl27532
      Location:37 → 103
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    Nucleotide Protein
    Heading Accession and Version

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