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    LOC4345879 uncharacterized LOC4345879 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345879, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345879
    Gene description
    uncharacterized LOC4345879
    Locus tag
    OSNPB_080485600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 10.6), leaves after flowering (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345879 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24142664..24150880)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24002829..24011153)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345877 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 1 Neighboring gene uncharacterized LOC4345880 Neighboring gene putative EG45-like domain containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345879
    Names
    Os08g0485600
    P0419H09.37-1
    P0419H09.37-2
    P0481F05.7-1
    P0481F05.7-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24142664..24150880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303502.1 → XP_066159599.1  uncharacterized protein LOC4345879 isoform X4

      UniProtKB/TrEMBL
      B8BBU4

    2. XM_015794862.3 → XP_015650348.1  uncharacterized protein LOC4345879 isoform X5

      Conserved Domains (1) summary
      cl00110
      Location:196 → 238
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    3. XM_015794858.3 → XP_015650344.1  uncharacterized protein LOC4345879 isoform X3

      UniProtKB/TrEMBL
      B8BBU4
      Conserved Domains (1) summary
      cl00110
      Location:196 → 238
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    4. XM_066303501.1 → XP_066159598.1  uncharacterized protein LOC4345879 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XH99, B8BBU4, Q6YTR7, Q6ZDS6

    5. XM_015794857.3 → XP_015650343.1  uncharacterized protein LOC4345879 isoform X2

      UniProtKB/TrEMBL
      B8BBU4
      Conserved Domains (1) summary
      cl00110
      Location:196 → 238
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    6. XM_015794863.3 → XP_015650349.1  uncharacterized protein LOC4345879 isoform X6

      Conserved Domains (1) summary
      cl00110
      Location:196 → 238
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    RNA

    1. XR_010734491.1 RNA Sequence

    2. XR_010734489.1 RNA Sequence

    3. XR_010734492.1 RNA Sequence

    4. XR_010734493.1 RNA Sequence

    5. XR_010734498.1 RNA Sequence

    6. XR_010734497.1 RNA Sequence

    7. XR_010734494.1 RNA Sequence

    8. XR_010734495.1 RNA Sequence

    9. XR_010734496.1 RNA Sequence

    10. XR_010734499.1 RNA Sequence

    11. XR_010734503.1 RNA Sequence

    12. XR_010734502.1 RNA Sequence

    13. XR_010734501.1 RNA Sequence

    14. XR_010734490.1 RNA Sequence

    15. XR_010734500.1 RNA Sequence

    16. XR_010734504.1 RNA Sequence

    17. XR_010734505.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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