LOC4349954 SWI/SNF complex subunit SWI3C [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4349954
Gene description: SWI/SNF complex subunit SWI3C
Locus tag: OSNPB_110183700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SWI3C; CHB705; SWI3C1; OsSWI3C; OsSWI3C1; OsJ_33208
Expression: Ubiquitous expression in roots after flowering (RPKM 26.3), leaves after flowering (RPKM 25.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 11

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	11	NC_089045.1 (4274447..4283049)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	11	NC_029266.1 (4220828..4229439)

Chromosome 11 - NC_089045.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: SWI/SNF complex subunit SWI3C homolog

Names: LOC_Os11g08080; Os11g0183700; Transcription regulatory protein SWI3C homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423172.1 → NP_001410101.1 SWI/SNF complex subunit SWI3C homolog

Status: VALIDATED

Source sequence(s)

AK066941

UniProtKB/Swiss-Prot

B9G9R2, Q0IU59, Q53KK6

UniProtKB/TrEMBL

B8BJG9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089045.1 Reference ASM3414082v1 Primary Assembly

Range

4274447..4283049

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015762024.3 → XP_015617510.1 SWI/SNF complex subunit SWI3C homolog isoform X1

UniProtKB/TrEMBL

B8BJG9

Conserved Domains (1) summary

COG5259
Location:186 → 645

RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]