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    LOC4352654 nucleobase-ascorbate transporter 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352654, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352654
    Gene description
    nucleobase-ascorbate transporter 3
    Locus tag
    OSNPB_120583900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352654 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24957628..24963407)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24246029..24252201)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein NPY4 Neighboring gene zinc finger protein 1 Neighboring gene uncharacterized LOC9270774 Neighboring gene uncharacterized LOC9269040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleobase-ascorbate transporter 3
    Names
    Os12g0583900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      24957628..24963407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764698.3 → XP_015620184.1  nucleobase-ascorbate transporter 3 isoform X1

      UniProtKB/TrEMBL
      B9GDZ7, Q0IM97, Q2QN04
      Conserved Domains (1) summary
      cl23746
      Location:55 → 463
      Xan_ur_permease; Permease family

    2. XM_015764705.3 → XP_015620191.1  nucleobase-ascorbate transporter 3 isoform X2

      UniProtKB/TrEMBL
      B9GDZ7
      Conserved Domains (1) summary
      cl23746
      Location:6 → 397
      Xan_ur_permease; Permease family

    3. XM_015764702.2 → XP_015620188.1  nucleobase-ascorbate transporter 3 isoform X1

      UniProtKB/TrEMBL
      B9GDZ7, Q0IM97, Q2QN04
      Conserved Domains (1) summary
      cl23746
      Location:55 → 463
      Xan_ur_permease; Permease family

    4. XM_066306291.1 → XP_066162388.1  nucleobase-ascorbate transporter 3 isoform X1

      UniProtKB/TrEMBL
      Q0IM97, Q2QN04

    5. XM_015764704.2 → XP_015620190.1  nucleobase-ascorbate transporter 3 isoform X1

      UniProtKB/TrEMBL
      B9GDZ7, Q0IM97, Q2QN04
      Conserved Domains (1) summary
      cl23746
      Location:55 → 463
      Xan_ur_permease; Permease family

    6. XM_066306292.1 → XP_066162389.1  nucleobase-ascorbate transporter 3 isoform X1

      UniProtKB/TrEMBL
      Q0IM97, Q2QN04
    Nucleotide Protein
    Heading Accession and Version

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