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    LOC4323889 putative clathrin assembly protein At2g01600 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323889, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323889
    Gene description
    putative clathrin assembly protein At2g01600
    Locus tag
    OSNPB_010694900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 25.7), roots before flowering (RPKM 21.4) and 6 other tissues See more
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    Genomic context

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    See LOC4323889 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29317168..29323096)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28728984..28735010)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4323885 Neighboring gene uncharacterized LOC136355748 Neighboring gene phosphoethanolamine N-methyltransferase Neighboring gene glycosyltransferase BC10-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin heavy chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle budding from membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in clathrin-coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative clathrin assembly protein At2g01600
    Names
    Os01g0694900
    P0431H09.25
    clathrin assembly protein AP180 short form-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29317168..29323096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766518.2 → XP_015622004.1  putative clathrin assembly protein At2g01600

      UniProtKB/TrEMBL
      A0A0P0V700, B8A812, B9EYY6, Q5N9P9
      Conserved Domains (1) summary
      pfam07651
      Location:29 → 310
      ANTH; ANTH domain
    Nucleotide Protein
    Heading Accession and Version

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