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    LOC4339876 homeobox protein BEL1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339876, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339876
    Gene description
    homeobox protein BEL1 homolog
    Locus tag
    OSNPB_060108900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BEL1; OsBEL
    Expression
    Biased expression in leaves before flowering (RPKM 9.3), roots after flowering (RPKM 5.1) and 3 other tissues See more
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    Genomic context

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    See LOC4339876 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (678685..685894)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (522684..529877)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 50-like Neighboring gene expansin-A17-like Neighboring gene phosphoglycerate mutase-like protein AT74H Neighboring gene brassinosteroid-responsive RING protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice. Nagasaki H, et al. Genes Genet Syst, 2005 Aug. PMID 16284419
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein BEL1 homolog
    Names
    Os06g0108900
    P0514G12.24-1
    bell-like homeodomain protein
    putative homeotic protein BEL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      678685..685894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785518.3 → XP_015641004.1  homeobox protein BEL1 homolog

      UniProtKB/TrEMBL
      A0A0P0WS23, Q0DF87, Q33DJ9, Q5VS84
      Conserved Domains (2) summary
      smart00574
      Location:101 → 236
      POX; domain associated with HOX domains
      pfam05920
      Location:312 → 351
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version

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