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    LOC4348743 E3 ubiquitin-protein ligase AIRP2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348743, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4348743
    Gene description
    E3 ubiquitin-protein ligase AIRP2
    Locus tag
    OSNPB_100445400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348743 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (16749657..16751877, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16084441..16086715, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF096-like Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene uncharacterized LOC4348744 Neighboring gene rubisco accumulation factor 1, chloroplastic-like Neighboring gene uncharacterized LOC136353552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AIRP2
    Names
    Os10g0445400
    putative zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      16749657..16751877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757338.3 → XP_015612824.1  E3 ubiquitin-protein ligase AIRP2 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XEJ9, B9G5Z1, Q337S4
      Conserved Domains (1) summary
      cl17238
      Location:138 → 177
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_015757336.2 → XP_015612822.1  E3 ubiquitin-protein ligase AIRP2 isoform X1

      UniProtKB/TrEMBL
      Q0IXE2, Q337S3
      Conserved Domains (1) summary
      cl17238
      Location:148 → 187
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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