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    LOC4352664 calcium-transporting ATPase 10, plasma membrane-type-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352664, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352664
    Gene description
    calcium-transporting ATPase 10, plasma membrane-type-like
    Locus tag
    OSNPB_120586600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ACA10; OsACA10; OsJ_36685
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    Genomic context

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    See LOC4352664 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25196680..25202394)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24485299..24490984)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene transcription factor HHO6 Neighboring gene uncharacterized LOC4352662 Neighboring gene uncharacterized LOC136354502 Neighboring gene uncharacterized LOC112937458 Neighboring gene uncharacterized LOC136351213

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type calcium transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-transporting ATPase 10, plasma membrane-type
    Names
    Ca(2+)-ATPase
    Calcium-transporting ATPase 10, plasma membrane-type
    LOC_Os12g39660
    Plastid envelope ATPase 1
    calcium-transporting ATPase 1, plasma membrane-type
    NP_001410529.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423600.1 → NP_001410529.1  calcium-transporting ATPase 10, plasma membrane-type

      Status: VALIDATED

      Source sequence(s)
      AK066259, CI315777, CI739287
      UniProtKB/Swiss-Prot
      A0A0P0YBR1, Q0IM87, Q2QMX9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      25196680..25202394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QMX9.1 GenPept UniProtKB/Swiss-Prot:Q2QMX9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials