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    LOC4332993 non-specific lipid transfer protein-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332993, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4332993
    Gene description
    non-specific lipid transfer protein-like 1
    Locus tag
    OSNPB_030385100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LTPL1; OsLTPL1; B1246D11.7
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    Genomic context

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    See LOC4332993 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15652407..15661566)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15300656..15309777)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 23 Neighboring gene uncharacterized LOC9272415 Neighboring gene uncharacterized LOC136355591 Neighboring gene uncharacterized LOC4332994

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa). Mashiguchi K, et al. Plant Cell Physiol, 2004 Dec. PMID 15653800
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    non-specific lipid transfer protein-like 1
    Names
    LOC_Os03g26820
    Os03g0385100
    non-specific lipid transfer protein-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402164.1 → NP_001389093.1  non-specific lipid transfer protein-like 1 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AP014959, CI024812, CI227162

    2. NM_001402165.1 → NP_001389094.1  non-specific lipid transfer protein-like 1 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      CI171218, CI214912, CI300689, CI491750
      UniProtKB/Swiss-Prot
      A0A0P0VYZ1, Q6ASY2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15652407..15661566
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ASY2.1 GenPept UniProtKB/Swiss-Prot:Q6ASY2

    Gene LinkOut

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