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    LOC4340661 16.0 kDa heat shock protein, peroxisomal-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340661, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340661
    Gene description
    16.0 kDa heat shock protein, peroxisomal-like
    Locus tag
    OSNPB_060253100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HSP16.0; OsHsp16.0; OsJ_20841
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    Genomic context

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    See LOC4340661 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8109763..8110549, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7940949..7941793, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase APD2 Neighboring gene cytosolic sulfotransferase 5-like Neighboring gene protein MAIN-LIKE 2-like Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein complex oligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to salt stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    16.0 kDa heat shock protein, peroxisomal
    Names
    LOC_Os06g14240
    P0046H10.20
    putative heat shock protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421521.1 → NP_001408450.1  16.0 kDa heat shock protein, peroxisomal

      Status: VALIDATED

      Source sequence(s)
      CI064624, CI173905, CI692319
      UniProtKB/Swiss-Prot
      A0A0P0WV90, Q652V8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      8109763..8110549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q652V8.1 GenPept UniProtKB/Swiss-Prot:Q652V8

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