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    LOC4333502 calcineurin B-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333502, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333502
    Gene description
    calcineurin B-like protein 3
    Locus tag
    OSNPB_030626800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CBL3; OsJ_11802
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    Genomic context

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    See LOC4333502 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (24749839..24756591)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (23888734..23895460)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein DA1-related 1 Neighboring gene protein DETOXIFICATION 29 Neighboring gene putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic Neighboring gene iron-sulfur protein required for NADH dehydrogenase, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function. Hwang YS, et al. Plant Physiol, 2005 Jul. PMID 15980189, Free PMC Article
    2. Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses. Gu Z, et al. Gene, 2008 May 31. PMID 18395997
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNA profiling using a rice (Oryza sativa cv Nipponbare) oligonucleotide microarray was used to monitor gene expression in de-embryonated rice grains.
      Title: A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcineurin B-like protein 3
    Names
    LOC_Os03g42840
    OSJNBa0002I03.21
    OSJNBb0013K08.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402189.1 → NP_001389118.1  calcineurin B-like protein 3

      Status: VALIDATED

      Source sequence(s)
      CB657905, CI143981, CI673890
      UniProtKB/Swiss-Prot
      B7F4D1, Q75LU8, Q8W5C8
      UniProtKB/TrEMBL
      B8AMP0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      24749839..24756591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75LU8.1 GenPept UniProtKB/Swiss-Prot:Q75LU8

    Gene LinkOut

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