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    LOC4346124 exocyst complex component EXO70B1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346124, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346124
    Gene description
    exocyst complex component EXO70B1
    Locus tag
    OSNPB_080530300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1770_H02.33; OJ1789_C07.12
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    Genomic context

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    See LOC4346124 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26560267..26562730)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26413709..26416065)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g15970 Neighboring gene large ribosomal subunit protein uL22 Neighboring gene small nucleolar RNA snoR74 Neighboring gene sulfite oxidase Neighboring gene uncharacterized LOC4346126 Neighboring gene uncharacterized LOC4346127

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-4,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exocyst complex component EXO70B1
    Names
    Os08g0530300
    putative leucine zipper-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26560267..26562730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792928.3 → XP_015648414.1  exocyst complex component EXO70B1

      UniProtKB/TrEMBL
      A0A0P0XIS4, A2YXE5, Q6ZI99
      Conserved Domains (1) summary
      pfam03081
      Location:222 → 596
      Exo70; Exo70 exocyst complex subunit
    Nucleotide Protein
    Heading Accession and Version

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