U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FAM185A family with sequence similarity 185 member A [ Homo sapiens (human) ]

    Gene ID: 222234, updated on 28-Oct-2024

    Summary

    Official Symbol
    FAM185Aprovided by HGNC
    Official Full Name
    family with sequence similarity 185 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:22412
    See related
    Ensembl:ENSG00000222011 AllianceGenome:HGNC:22412
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Located in mitochondrion. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See FAM185A in Genome Data Viewer
    Location:
    7q22.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (102748999..102850723)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (104063664..104165101)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (102389446..102491170)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene POLR2J2-UPK3BL1 readthrough Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102321101-102321878 Neighboring gene uncharacterized LOC124901713 Neighboring gene RNA polymerase II subunit J2 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:102348051-102348175 Neighboring gene RAS p21 protein activator 4D, pseudogene Neighboring gene Sharpr-MPRA regulatory region 2028 Neighboring gene ribosomal protein L7a pseudogene 39 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene Neighboring gene RNA, U6 small nuclear 1136, pseudogene Neighboring gene F-box and leucine rich repeat protein 13 Neighboring gene RN7SK pseudogene 198 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:102516003-102517202 Neighboring gene NANOG hESC enhancer GRCh37_chr7:102541113-102541614 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:102580673-102581173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:102584236-102584801 Neighboring gene leucine rich repeat containing 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145268.2NP_001138740.2  protein FAM185A isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC006477, AC105052
      Consensus CDS
      CCDS47676.1
      UniProtKB/Swiss-Prot
      A8MUR7, B4DQD3, C9IZ91, Q8N0U4
      Related
      ENSP00000395340.2, ENST00000413034.3
      Conserved Domains (1) summary
      pfam13349
      Location:185336
      DUF4097; Putative adhesin
    2. NM_001145269.2NP_001138741.2  protein FAM185A isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate donor splice site at the first exon and is missing the next coding exon compared to transcript variant 1. However, it maintains the reading frame and results in a shorter isoform (2) lacking a 118 aa protein segment compared to isoform 1.
      Source sequence(s)
      AC006477, AC105052
      Consensus CDS
      CCDS47677.1
      Related
      ENSP00000387066.3, ENST00000409231.7
      Conserved Domains (1) summary
      cl23960
      Location:98196
      DUF4097; Putative adhesin
    3. NM_001350987.2NP_001337916.2  protein FAM185A isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) encodes isoform 3.
      Source sequence(s)
      AC006477, AC105052
      Conserved Domains (1) summary
      cl23960
      Location:152282
      DUF4097; Putative adhesin

    RNA

    1. NR_026879.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate donor splice site at the 5' terminal exon compared to transcript variant 1. The use of the translational start codon as in variant 1, results in premature translation termination, and renders this transcript a candidate for nonsense-mediated mRNA decay (NMD). The transcript is sufficiently abundant to represent it as a non-coding RefSeq record.
      Source sequence(s)
      AC006477, AC105052
      Related
      ENST00000420217.1
    2. NR_146976.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    3. NR_146977.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    4. NR_146978.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    5. NR_146979.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005250, AC006477, AC105052
    6. NR_146980.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    7. NR_146981.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005250, AC006477, AC105052
    8. NR_146982.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005250, AC006477, AC105052
    9. NR_146983.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    10. NR_146984.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005250, AC006477, AC105052
    11. NR_146985.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    12. NR_146986.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005250, AC006477, AC105052
    13. NR_146987.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
    14. NR_146989.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006477, AC105052
      Related
      ENST00000442873.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      102748999..102850723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      104063664..104165101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_147194.1: Suppressed sequence

      Description
      NM_147194.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.