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    Etaa1os Ewing tumor-associated antigen 1, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 102633673, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Etaa1osprovided by MGI
    Official Full Name
    Ewing tumor-associated antigen 1, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1920221
    See related
    Ensembl:ENSMUSG00000086468 AllianceGenome:MGI:1920221
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2900053O20Rik; 4930542E09Rik
    Expression
    Broad expression in testis adult (RPKM 6.1), bladder adult (RPKM 0.9) and 16 other tissues See more
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    Genomic context

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    See Etaa1os in Genome Data Viewer
    Location:
    11 A3.1; 11 10.44 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (17903970..17909582)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (17953970..17959582)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 29 pseudogene Neighboring gene STARR-seq mESC enhancer starr_28712 Neighboring gene STARR-seq mESC enhancer starr_28715 Neighboring gene STARR-seq mESC enhancer starr_28716 Neighboring gene STARR-seq mESC enhancer starr_28717 Neighboring gene STARR-seq mESC enhancer starr_28718 Neighboring gene STARR-seq mESC enhancer starr_28719 Neighboring gene STARR-seq mESC enhancer starr_28720 Neighboring gene STARR-positive B cell enhancer ABC_E6954 Neighboring gene STARR-seq mESC enhancer starr_28722 Neighboring gene STARR-seq mESC enhancer starr_28723 Neighboring gene Ewing tumor-associated antigen 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 31505

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • Etaa1 opposite strand transcript

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131915.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK013680, AL627070
      Related
      ENSMUST00000140161.3

    2. NR_131916.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons and contains an alternate 3' terminal exon, resulting in a shorter transcript than variant 1.
      Source sequence(s)
      AK013680, AK019730, BY715599
      Related
      ENSMUST00000148496.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      17903970..17909582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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