U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02210 long intergenic non-protein coding RNA 2210 [ Homo sapiens (human) ]

    Gene ID: 147081, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02210provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2210provided by HGNC
    Primary source
    HGNC:HGNC:26327
    See related
    Ensembl:ENSG00000293460 AllianceGenome:HGNC:26327
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C17orf69; CRHR1-IT1
    Expression
    Ubiquitous expression in skin (RPKM 2.2), brain (RPKM 2.1) and 23 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC02210 in Genome Data Viewer
    Location:
    17q21.31
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (45620329..45646231)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (46482013..46507919)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (43697695..43723597)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43677957-43678654 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2 Neighboring gene LINC02210-CRHR1 readthrough Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43695849-43696828 Neighboring gene ribosomal protein S26 pseudogene 8 Neighboring gene ARF GTPase 2, pseudogene Neighboring gene uncharacterized LOC105371802 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:43782244-43783443 Neighboring gene Sharpr-MPRA regulatory region 9533 Neighboring gene uncharacterized LOC107985028

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study reveals genetic risk underlying Parkinson's disease.
    EBI GWAS Catalog
    Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.
    EBI GWAS Catalog

    General gene information

    Markers

    Readthrough LINC02210-CRHR1

    Readthrough gene: LINC02210-CRHR1, Included gene: CRHR1

    Other Names

    • CRHR1 intronic transcript 1 (non-protein coding)
    • LINC.tmp695175

    Clone Names

    • FLJ18493, FLJ25168, FLJ30754, FLJ34210, FLJ36594, FLJ60266, FLJ60308, MGC57346

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026680.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544, AK311451, BC012843, GD136344
    2. NR_027295.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC012843, BC045575, GD136344
      Related
      ENST00000455565.5
    3. NR_138257.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544
    4. NR_138258.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544
    5. NR_138259.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544
    6. NR_138260.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      45620329..45646231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_167251.2 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      1141731..1168475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187663.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      322453..348359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      46482013..46507919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152466.1: Suppressed sequence

      Description
      NM_152466.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NR_026906.2: Suppressed sequence

      Description
      NR_026906.2: This RefSeq was removed because it represented a partial transcript.