DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: DWNN domain, a CCHC-type zinc finger
Primary source: TAIR:AT5G47430
Locus tag: AT5G47430
See related: Araport:AT5G47430
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MQL5.29; MQL5_29
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 16

Sequence:: Chromosome: 5; NC_003076.8 (19235555..19241263, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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NM_001085256.1

Supported by ESTs:

NM_001203555.1

Supported by ESTs:

NM_001344718.1

Supported by ESTs:

NM_001344719.1

Supported by ESTs:

NM_001344720.1

Supported by ESTs:

NM_124114.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: DWNN domain, a CCHC-type zinc finger

NP_001078725.1

DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1); Has 13459 Blast hits to 9419 proteins in 455 species: Archae - 2; Bacteria - 407; Metazoa - 7832; Fungi - 2088; Plants - 1220; Viruses - 27; Other Eukaryotes - 1883 (source: NCBI BLink).

NP_001190484.1

DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1).

NP_199554.2

DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1); Has 13590 Blast hits to 9527 proteins in 457 species: Archae - 2; Bacteria - 408; Metazoa - 7940; Fungi - 2101; Plants - 1227; Viruses - 27; Other Eukaryotes - 1885 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

19235555..19241263 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_124114.4 → NP_199554.2 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_199554.2

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MRK5, B9DFV2, F4JX50, Q8L7L2, Q9FHH9

UniProtKB/TrEMBL

A0A5S9YC04, A0A654G925

Conserved Domains (5) summary

COG5222
Location:3 → 406

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

pfam00097
Location:295 → 329

zf-C3HC4; Zinc finger, C3HC4 type (RING finger)

pfam08783
Location:3 → 75

DWNN; DWNN domain

pfam13696
Location:205 → 225

zf-CCHC_2; Zinc knuckle

cl00891
Location:524 → 594

Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
NM_001344718.1 → NP_001330703.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UBX9, A0A1P8BBL6, A0A384LLY2, Q0WVP4

Conserved Domains (2) summary

COG5222
Location:3 → 406

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

pfam07271
Location:453 → 608

Cytadhesin_P30; Cytadhesin P30/P32
NM_001344720.1 → NP_001330705.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BBL5, A0A5S9YC04, A0A654G925
NM_001344719.1 → NP_001330704.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UD59, A0A1P8BBL8, A0A384KLG9, Q0WVP4
NM_001085256.1 → NP_001078725.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078725.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YC04, A0A654G925

Conserved Domains (4) summary

COG5222
Location:2 → 345

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

pfam00097
Location:234 → 268

zf-C3HC4; Zinc finger, C3HC4 type (RING finger)

pfam13696
Location:144 → 164

zf-CCHC_2; Zinc knuckle

cl00891
Location:463 → 533

Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
NM_001203555.1 → NP_001190484.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190484.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YC04, A0A654G925

Conserved Domains (5) summary

COG5222
Location:3 → 403

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

pfam00097
Location:292 → 326

zf-C3HC4; Zinc finger, C3HC4 type (RING finger)

pfam08783
Location:3 → 75

DWNN; DWNN domain

pfam13696
Location:202 → 222

zf-CCHC_2; Zinc knuckle

cl00891
Location:521 → 591

Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...