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    Cell division control, Cdc6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837238, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cell division control, Cdc6
    Primary source
    TAIR:AT1G07270
    Locus tag
    AT1G07270
    See related
    Araport:AT1G07270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10K1.2; F10K1_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (2229444..2233017, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-glucosyl transferase 71C5 Neighboring gene UDP-glucosyl transferase 71C4 Neighboring gene UDP-glucosyl transferase 71C3 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cell division control, Cdc6
    NP_172207.2
    • Cell division control, Cdc6; FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: cell division control 6 (TAIR:AT2G29680.2); Has 1458 Blast hits to 1448 proteins in 345 species: Archae - 437; Bacteria - 0; Metazoa - 359; Fungi - 295; Plants - 123; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2229444..2233017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100601.3 → NP_172207.2  Cell division control, Cdc6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172207.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W032, Q9LML8
      UniProtKB/TrEMBL
      A0A5S9T2C2, A0A654ECP1
      Conserved Domains (1) summary
      COG1474
      Location:114 → 497
      CDC6; Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]

    2. NM_001331686.1 → NP_001322699.1  Cell division control, Cdc6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUT2, A0A5S9T2C2, A0A654ECP1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W032.1

    Gene LinkOut

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