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    BC048507 cDNA sequence BC048507 [ Mus musculus (house mouse) ]

    Gene ID: 408058, updated on 28-Oct-2024

    Summary

    Official Symbol
    BC048507provided by MGI
    Official Full Name
    cDNA sequence BC048507provided by MGI
    Primary source
    MGI:MGI:3040680
    See related
    Ensembl:ENSMUSG00000064063 AllianceGenome:MGI:3040680
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in intraciliary retrograde transport and motile cilium assembly. Predicted to be part of cytoplasmic dynein complex. [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

    See BC048507 in Genome Data Viewer
    Location:
    13 B3; 13 34.85 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (68011445..68012042)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67863326..67863923)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930525G20 gene Neighboring gene STARR-seq mESC enhancer starr_34914 Neighboring gene zinc finger protein 273 Neighboring gene KRAB box domain containing 5 Neighboring gene STARR-seq mESC enhancer starr_34916 Neighboring gene predicted gene 7969 Neighboring gene STARR-seq mESC enhancer starr_34918 Neighboring gene up-regulated in Myc liver

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables dynein intermediate chain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in intraciliary retrograde transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in motile cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of cytoplasmic dynein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    dynein light chain LC8-type 1-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001185.3NP_001001185.1  dynein light chain LC8-type 1-like

      See identical proteins and their annotated locations for NP_001001185.1

      Status: VALIDATED

      Source sequence(s)
      AK133011
      Consensus CDS
      CCDS36718.1
      UniProtKB/TrEMBL
      Q80ZS7
      Related
      ENSMUSP00000077564.6, ENSMUST00000078471.7
      Conserved Domains (1) summary
      cl03131
      Location:189
      Dynein_light; Dynein light chain type 1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      68011445..68012042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)