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    MAFTRR MAF transcriptional regulator RNA [ Homo sapiens (human) ]

    Gene ID: 102467146, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MAFTRRprovided by HGNC
    Official Full Name
    MAF transcriptional regulator RNAprovided by HGNC
    Primary source
    HGNC:HGNC:51525
    See related
    Ensembl:ENSG00000261390 MIM:616264; AllianceGenome:HGNC:51525
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    lincMAF4; linc-MAF-4
    Expression
    Broad expression in skin (RPKM 1.0), ovary (RPKM 0.9) and 18 other tissues See more
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    Genomic context

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    See MAFTRR in Genome Data Viewer
    Location:
    16q23.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (79721312..79770532, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (85777679..85827073, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (79755209..79804429, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene MAF bZIP transcription factor Neighboring gene uncharacterized LOC124903729 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:79561711-79561812 Neighboring gene Sharpr-MPRA regulatory region 6091 Neighboring gene uncharacterized LOC101928230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11159 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7737 Neighboring gene uncharacterized LOC105371356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:79742031-79742530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11160 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:79804516-79804714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11161 Neighboring gene long intergenic non-protein coding RNA 1229 Neighboring gene long intergenic non-protein coding RNA 1228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11164 Neighboring gene HNF4 motif-containing MPRA enhancer 204/205 Neighboring gene Sharpr-MPRA regulatory region 4834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11165 Neighboring gene NFE2L2 motif-containing MPRA enhancer 24 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:80006081-80006287 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:80060683-80061882 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:80078510-80079709 Neighboring gene uncharacterized LOC105371357 Neighboring gene uncharacterized LOC105371358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7739

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Elevated Expression of the Long Noncoding RNA MAFTRR in Patients with Hashimoto's Thyroiditis. Peng H, et al. J Immunol Res, 2021. PMID 34869781, Free PMC Article
    2. Investigation of Linc-MAF-4 expression as an effective marker in brucellosis. Gheitasi R, et al. Mol Immunol, 2020 Jul. PMID 32417631
    3. The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4. Ranzani V, et al. Nat Immunol, 2015 Mar. PMID 25621826, Free PMC Article
    4. Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations. Zhan M, et al. Hum Mol Genet, 2014 Oct 15. PMID 24852370

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Elevated Expression of the Long Noncoding RNA MAFTRR in Patients with Hashimoto's Thyroiditis.
      Title: Elevated Expression of the Long Noncoding RNA MAFTRR in Patients with Hashimoto's Thyroiditis.
    2. Investigation of Linc-MAF-4 expression as an effective marker in brucellosis.
      Title: Investigation of Linc-MAF-4 expression as an effective marker in brucellosis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104663.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX108785
      Related
      ENST00000567993.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      79721312..79770532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      85777679..85827073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials