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    LINC01514 long intergenic non-protein coding RNA 1514 [ Homo sapiens (human) ]

    Gene ID: 101927396, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01514provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1514provided by HGNC
    Primary source
    HGNC:HGNC:51207
    See related
    Ensembl:ENSG00000237579 AllianceGenome:HGNC:51207
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

    See LINC01514 in Genome Data Viewer
    Location:
    10q24.31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (101176322..101194147)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (102059677..102077502)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (102936079..102953904)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene TLX1 neighbor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102902239-102903043 Neighboring gene T cell leukemia homeobox 1 Neighboring gene RNY5 pseudogene 7 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:102942541-102943162 Neighboring gene SMARCE1 pseudogene 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:102950066-102950672 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2719 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:102976445-102977036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:102977629-102978220 Neighboring gene uncharacterized LOC124902491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102982447-102983096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102985871-102986372 Neighboring gene ladybird homeobox 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120620.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL135794, BC038784, HY040460
      Related
      ENST00000434189.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      101176322..101194147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      102059677..102077502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)