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    LOC105378029 uncharacterized LOC105378029 [ Homo sapiens (human) ]

    Gene ID: 105378029, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105378029
    Gene description
    uncharacterized LOC105378029
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in heart (RPKM 1.5), adrenal (RPKM 0.1) and 1 other tissue See more
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    Genomic context

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    See LOC105378029 in Genome Data Viewer
    Location:
    6q24.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (141403273..141451006)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (142588955..142635372)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723724 Neighboring gene uncharacterized LOC124901413 Neighboring gene ribosomal protein S18 pseudogene 10 Neighboring gene Sharpr-MPRA regulatory region 6593 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:141474625-141475238 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:141709659-141710349 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:141781053-141781935 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:141787949-141788659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:141792612-141793211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25175 Neighboring gene MPRA-validated peak6162 silencer Neighboring gene RN7SK pseudogene 106 Neighboring gene RPS3A pseudogene 23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      141403273..141451006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_943077.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      142588955..142635372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077194.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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