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    rsf1b.1 remodeling and spacing factor 1b, tandem duplicate 1 [ Danio rerio (zebrafish) ]

    Gene ID: 327618, updated on 14-Nov-2024

    Summary

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    Official Symbol
    rsf1b.1provided by ZNC
    Official Full Name
    remodeling and spacing factor 1b, tandem duplicate 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5829
    See related
    Ensembl:ENSDARG00000068640 AllianceGenome:ZFIN:ZDB-GENE-030131-5829
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi20e01; wu:fi20e01; si:dkey-21n12.1
    Summary
    Predicted to enable histone binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RSF complex. Orthologous to human RSF1 (remodeling and spacing factor 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See rsf1b.1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (36611103..36633927, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (36667343..36690175, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene NIPBL cohesin loading factor b Neighboring gene solute carrier family 1 member 3b Neighboring gene uncharacterized LOC110440075 Neighboring gene uncoupling protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    2. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RSF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    remodeling and spacing factor 1; uncharacterized protein LOC327618

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      36611103..36633927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223991.1 → XP_068080092.1  remodeling and spacing factor 1 isoform X4

    2. XM_017358080.3 → XP_017213569.1  remodeling and spacing factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z8X0
      Conserved Domains (5) summary
      cd15543
      Location:1370 → 1415
      PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)
      pfam02791
      Location:23 → 67
      DDT; DDT domain
      pfam05087
      Location:226 → 322
      Rota_VP2; Rotavirus VP2 protein
      pfam15613
      Location:139 → 171
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      cl02608
      Location:1392 → 1445
      BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    3. XM_017358079.3 → XP_017213568.1  remodeling and spacing factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z326, F1Q6Y6
      Related
      ENSDARP00000071629.3, ENSDART00000077161.4
      Conserved Domains (5) summary
      cd15543
      Location:1371 → 1416
      PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)
      pfam02791
      Location:23 → 67
      DDT; DDT domain
      pfam05087
      Location:226 → 322
      Rota_VP2; Rotavirus VP2 protein
      pfam15613
      Location:139 → 171
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      cl02608
      Location:1393 → 1446
      BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    4. XM_017358078.3 → XP_017213567.1  remodeling and spacing factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z1G1
      Conserved Domains (5) summary
      cd15543
      Location:1371 → 1416
      PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)
      pfam02791
      Location:23 → 67
      DDT; DDT domain
      pfam05087
      Location:226 → 322
      Rota_VP2; Rotavirus VP2 protein
      pfam15613
      Location:139 → 171
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      cl02608
      Location:1393 → 1446
      BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    Nucleotide Protein Strain
    Heading Accession and Version

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