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    polr1g RNA polymerase I subunit G [ Danio rerio (zebrafish) ]

    Gene ID: 792693, updated on 2-Nov-2024

    Summary

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    Official Symbol
    polr1gprovided by ZNC
    Official Full Name
    RNA polymerase I subunit Gprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101202-2
    See related
    Ensembl:ENSDARG00000090386 AllianceGenome:ZFIN:ZDB-GENE-101202-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cd3eap
    Summary
    Predicted to act upstream of or within transcription by RNA polymerase I. Human ortholog(s) of this gene implicated in multiple myeloma. Orthologous to human POLR1G (RNA polymerase I subunit G). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See polr1g in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (28787091..28802227, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (28854215..28872142, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene bleomycin hydrolase Neighboring gene NOVA alternative splicing regulator 2 Neighboring gene G protein-coupled receptor 4 Neighboring gene uncharacterized protein PF3D7_1120000-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Ghrelin affects carbohydrate-glycogen metabolism via insulin inhibition and glucagon stimulation in the zebrafish (Danio rerio) brain. Cruz SA, et al. Comp Biochem Physiol A Mol Integr Physiol, 2010 Jun. PMID 20138234
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase I subunit RPA34
    Names
    CD3e molecule, epsilon associated protein
    DNA-directed RNA polymerase I subunit RPA43-like
    cd3ap

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326401.1 → NP_001313330.1  DNA-directed RNA polymerase I subunit RPA34 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BX950186, EH495023, EH562149
      UniProtKB/TrEMBL
      A0A286YBB9, A0A8M1P7W8, X1WGE9
      Related
      ENSDARP00000129304.1, ENSDART00000153825.2
      Conserved Domains (1) summary
      pfam08208
      Location:44 → 163
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5

    2. NM_001326403.1 → NP_001313332.1  DNA-directed RNA polymerase I subunit RPA34 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX950186, EH495023, EH562149
      UniProtKB/TrEMBL
      A0A8M1P8K2

    3. NM_001326404.1 → NP_001313333.1  DNA-directed RNA polymerase I subunit RPA34 isoform 3

      Status: VALIDATED

      Source sequence(s)
      BX950186, EH495023, EH562149
      UniProtKB/TrEMBL
      A0A8M9QLJ2
      Related
      ENSDARP00000128122.1, ENSDART00000155008.2
      Conserved Domains (1) summary
      pfam08208
      Location:10 → 116
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      28787091..28802227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481481.2 → XP_021337156.1  DNA-directed RNA polymerase I subunit RPA34 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QLJ2
      Conserved Domains (1) summary
      pfam08208
      Location:10 → 116
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5

    2. XM_021481480.2 → XP_021337155.1  DNA-directed RNA polymerase I subunit RPA34 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QLJ2
      Conserved Domains (1) summary
      pfam08208
      Location:10 → 116
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5
    Nucleotide Protein Strain
    Heading Accession and Version

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