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    si:dkey-230p4.1 si:dkey-230p4.1 [ Danio rerio (zebrafish) ]

    Gene ID: 564101, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-230p4.1provided by ZNC
    Official Full Name
    si:dkey-230p4.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-380
    See related
    Ensembl:ENSDARG00000020834 AllianceGenome:ZFIN:ZDB-GENE-081104-380
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human CEP250 (centrosomal protein 250). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-230p4.1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (12905538..12953973)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (12934338..12983084)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496454 Neighboring gene high choriolytic enzyme 2-like 2 Neighboring gene high choriolytic enzyme 2-like 1 Neighboring gene bone morphogenetic protein receptor, type II b (serine/threonine kinase) Neighboring gene uncharacterized LOC103911618 Neighboring gene family with sequence similarity 117 member Bb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    centrosome-associated protein CEP250

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      12905538..12953973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_687458.8 → XP_692550.3  centrosome-associated protein CEP250 isoform X1

      UniProtKB/TrEMBL
      A0A8N7UV05, F1R371
      Related
      ENSDARP00000093124.3, ENSDART00000102348.5
      Conserved Domains (4) summary
      COG1196
      Location:885 → 1702
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:2093 → 2771
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01576
      Location:1360 → 2394
      Myosin_tail_1; Myosin tail
      pfam15035
      Location:70 → 243
      Rootletin; Ciliary rootlet component, centrosome cohesion

    2. XM_021478844.2 → XP_021334519.1  centrosome-associated protein CEP250 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QB47
      Conserved Domains (2) summary
      pfam15035
      Location:70 → 243
      Rootletin; Ciliary rootlet component, centrosome cohesion
      cl25732
      Location:1461 → 2301
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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