si:dkey-102g19.3 si:dkey-102g19.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-102g19.3provided by ZNC
Official Full Name: si:dkey-102g19.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-091204-230
See related: Ensembl:ENSDARG00000086337 AllianceGenome:ZFIN:ZDB-GENE-091204-230
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be located in extracellular region. Orthologous to human LYPD8 (LY6/PLAUR domain containing 8). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

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Location:: chromosome: 21

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (4702768..4707630)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (4538214..4543050)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC566752

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386263.1 → NP_001373192.1 uncharacterized protein LOC566752 precursor

Status: VALIDATED

Source sequence(s)

CR388125

UniProtKB/TrEMBL

A0A8N7UR86

Related

ENSDARP00000118800.1, ENSDART00000147404.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007132.7 Reference GRCz11 Primary Assembly

Range

4702768..4707630

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021468983.2 → XP_021324658.1 uncharacterized protein LOC566752 isoform X1

UniProtKB/TrEMBL

A0A8M9PD04

Conserved Domains (1) summary

cl10471
Location:18 → 96

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...