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    rab36 RAB36, member RAS oncogene family [ Danio rerio (zebrafish) ]

    Gene ID: 780839, updated on 2-Nov-2024

    Summary

    Official Symbol
    rab36provided by ZNC
    Official Full Name
    RAB36, member RAS oncogene familyprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040910-5
    See related
    Ensembl:ENSDARG00000014058 AllianceGenome:ZFIN:ZDB-GENE-040910-5
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:158229
    Summary
    Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport. Orthologous to human RAB36 (RAB36, member RAS oncogene family). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See rab36 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (17223686..17232408, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (17265717..17274454, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide Neighboring gene DEP domain containing 5, GATOR1 subcomplex subunit Neighboring gene uncharacterized LOC110440068 Neighboring gene guanine nucleotide binding protein (G protein), alpha z polypeptide Neighboring gene signal peptide peptidase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    ras-related protein Rab-36
    NP_001073128.1
    XP_009303483.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079660.1NP_001073128.1  ras-related protein Rab-36

      See identical proteins and their annotated locations for NP_001073128.1

      Status: PROVISIONAL

      Source sequence(s)
      BC127570
      UniProtKB/TrEMBL
      A0A8N7UYG4, A0PJQ5
      Related
      ENSDARP00000039309.6, ENSDART00000038577.9
      Conserved Domains (2) summary
      smart00175
      Location:57216
      RAB; Rab subfamily of small GTPases
      cl21455
      Location:56221
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      17223686..17232408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305208.3XP_009303483.1  ras-related protein Rab-36 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BCW7
      Conserved Domains (2) summary
      smart00175
      Location:57182
      RAB; Rab subfamily of small GTPases
      cl21455
      Location:56187
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases