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    LOC100149241 transmembrane channel-like protein 6 [ Danio rerio (zebrafish) ]

    Gene ID: 100149241, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100149241
    Gene description
    transmembrane channel-like protein 6
    See related
    Ensembl:ENSDARG00000069787
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100149241 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (57788723..57816738)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (57718207..57746356)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene calcium activated nucleotidase 1a Neighboring gene synaptogyrin 2a Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like 3 Neighboring gene centromere protein X

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transmembrane channel-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      57788723..57816738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354837.3 → XP_017210326.1  transmembrane channel-like protein 6

      UniProtKB/TrEMBL
      A0A8M6Z556
      Related
      ENSDARP00000092615.4, ENSDART00000101839.5
    Nucleotide Protein
    Heading Accession and Version

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