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    cfap210 cilia and flagella associated protein 210 [ Danio rerio (zebrafish) ]

    Gene ID: 559457, updated on 2-Nov-2024

    Summary

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    Official Symbol
    cfap210provided by ZNC
    Official Full Name
    cilia and flagella associated protein 210provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-457
    See related
    Ensembl:ENSDARG00000077928 AllianceGenome:ZFIN:ZDB-GENE-081104-457
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc173; si:dkeyp-13f6.4
    Summary
    Predicted to be active in axonemal microtubule. Orthologous to human CFAP210 (cilia and flagella associated protein 210). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cfap210 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (48219150..48231020)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (48521741..48533625)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 23 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene phosphoglycerate dehydrogenase Neighboring gene FAST kinase domains 1 Neighboring gene kelch-like family member 41a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Structure, evolution and expression of collagen XXVIII: Lessons from the zebrafish. Gebauer JM, et al. Matrix Biol, 2016 Jan. PMID 26235539
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 173; cilia- and flagella- associated protein 210
    Names
    coiled-coil domain containing 173

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      48219150..48231020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479038.2 → XP_021334713.1  cilia- and flagella- associated protein 210 isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q5A4
      Conserved Domains (1) summary
      pfam13868
      Location:117 → 446
      TPH; Trichohyalin-plectin-homology domain

    2. XM_002663426.4 → XP_002663472.1  cilia- and flagella- associated protein 210 isoform X1

      UniProtKB/TrEMBL
      A0A8M1RM28, E7F133
      Related
      ENSDARP00000102848.2, ENSDART00000111225.5
      Conserved Domains (2) summary
      pfam13868
      Location:139 → 481
      TPH; Trichohyalin-plectin-homology domain
      pfam14235
      Location:187 → 251
      DUF4337; Domain of unknown function (DUF4337)
    Nucleotide Protein Strain
    Heading Accession and Version

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