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    rpl7 ribosomal protein L7 [ Danio rerio (zebrafish) ]

    Gene ID: 336710, updated on 2-Nov-2024

    Summary

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    Official Symbol
    rpl7provided by ZNC
    Official Full Name
    ribosomal protein L7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8654
    See related
    Ensembl:ENSDARG00000007320 AllianceGenome:ZFIN:ZDB-GENE-030131-8654
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    bb02h10; mg:bb02h10; wu:fa93c11
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rpl7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (30177476..30182333, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (30193943..30198800, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B6a Neighboring gene transient receptor potential cation channel, subfamily A, member 1a Neighboring gene potassium voltage-gated channel subfamily B member 2a Neighboring gene small nucleolar SNORD12/SNORD106 Neighboring gene retinol dehydrogenase 10b Neighboring gene ubiquitin conjugating enzyme E2 Wa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Cold acclimation-induced up-regulation of the ribosomal protein L7 gene in the freeze tolerant wood frog, Rana sylvatica. Wu S, et al. Gene, 2008 Nov 15. PMID 18706984
    2. A comparative study of nickel nanoparticle and ionic nickel toxicities in zebrafish: histopathological changes and oxidative stress. Yokota S, et al. J Toxicol Sci, 2019. PMID 31708531
    3. Study on the Joint Toxicity of BPZ, BPS, BPC and BPF to Zebrafish. Han Y, et al. Molecules, 2021 Jul 9. PMID 34299453, Free PMC Article
    4. Replacement of Dietary Fish Protein with Bacterial Protein Results in Decreased Adiposity Coupled with Liver Gene Expression Changes in Female Danio rerio. Williams MB, et al. Curr Dev Nutr, 2024 Jan. PMID 38234580, Free PMC Article
    5. Genomic organization and transcription of the medaka and zebrafish cellular retinol-binding protein (rbp) genes. Parmar MB, et al. Mar Genomics, 2013 Sep. PMID 23632098

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213644.2 → NP_998809.1  large ribosomal subunit protein uL30

      See identical proteins and their annotated locations for NP_998809.1

      Status: PROVISIONAL

      Source sequence(s)
      AY561515
      UniProtKB/TrEMBL
      A0A8M1PFF6, Q6Q417
      Related
      ENSDARP00000018980.9, ENSDART00000019149.10
      Conserved Domains (3) summary
      cd01657
      Location:87 → 246
      Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
      TIGR01310
      Location:14 → 246
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form
      pfam08079
      Location:15 → 85
      Ribosomal_L30_N; Ribosomal L30 N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      30177476..30182333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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