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    znf638 zinc finger protein 638 [ Danio rerio (zebrafish) ]

    Gene ID: 563749, updated on 14-Nov-2024

    Summary

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    Official Symbol
    znf638provided by ZNC
    Official Full Name
    zinc finger protein 638provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-265
    See related
    Ensembl:ENSDARG00000104169 AllianceGenome:ZFIN:ZDB-GENE-141216-265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-212k18.4
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be active in nucleus. Orthologous to human ZNF638 (zinc finger protein 638). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See znf638 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19625628..19661856, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19373654..19390386, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch211-212k18.15 Neighboring gene zgc:194655 Neighboring gene si:ch211-196p9.1 Neighboring gene triokinase/FMN cyclase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 638
    Names
    zinc finger protein 638-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      19625628..19661856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477756.2 → XP_021333431.1  zinc finger protein 638 isoform X4

      UniProtKB/TrEMBL
      A0A8M9QCJ6
      Conserved Domains (4) summary
      smart00451
      Location:2246 → 2280
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:773 → 844
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cd12716
      Location:941 → 1016
      RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
      cl26511
      Location:1296 → 2234
      Neuromodulin_N; Gap junction protein N-terminal region

    2. XM_021477755.2 → XP_021333430.1  zinc finger protein 638 isoform X3

      UniProtKB/TrEMBL
      A0A8M9QHK5
      Conserved Domains (4) summary
      smart00451
      Location:2247 → 2281
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:773 → 844
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cd12716
      Location:942 → 1017
      RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
      cl26511
      Location:1297 → 2235
      Neuromodulin_N; Gap junction protein N-terminal region

    3. XM_068222574.1 → XP_068078675.1  zinc finger protein 638 isoform X2

    4. XM_021477758.2 → XP_021333433.1  zinc finger protein 638 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
      Related
      ENSDARP00000132923.2, ENSDART00000163686.2
      Conserved Domains (4) summary
      smart00451
      Location:2135 → 2169
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:661 → 732
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cl17169
      Location:830 → 905
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26511
      Location:1185 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region

    5. XM_021477757.2 → XP_021333432.1  zinc finger protein 638 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
      Related
      ENSDARP00000141709.1, ENSDART00000160936.2
      Conserved Domains (4) summary
      smart00451
      Location:2135 → 2169
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:661 → 732
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cl17169
      Location:830 → 905
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26511
      Location:1185 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      347835..364551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068218375.1 → XP_068074476.1  zinc finger protein 638 isoform X2

    2. XM_009303098.4 → XP_009301373.1  zinc finger protein 638 isoform X1

      See identical proteins and their annotated locations for XP_009301373.1

      UniProtKB/TrEMBL
      A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
      Conserved Domains (4) summary
      smart00451
      Location:2135 → 2169
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:661 → 732
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cl17169
      Location:830 → 905
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26511
      Location:1185 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region

    3. XM_009303097.4 → XP_009301372.1  zinc finger protein 638 isoform X1

      See identical proteins and their annotated locations for XP_009301372.1

      UniProtKB/TrEMBL
      A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
      Conserved Domains (4) summary
      smart00451
      Location:2135 → 2169
      ZnF_U1; U1-like zinc finger
      cd12436
      Location:661 → 732
      RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
      cl17169
      Location:830 → 905
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26511
      Location:1185 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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