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    • Showing Current items.

    zgc:111983 zgc:111983 [ Danio rerio (zebrafish) ]

    Gene ID: 550501, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:111983provided by ZNC
    Official Full Name
    zgc:111983provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-335
    See related
    Ensembl:ENSDARG00000006588 AllianceGenome:ZFIN:ZDB-GENE-050417-335
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi32a11; zgc:56382; wu:fb09a02; wu:fi32a11
    Summary
    Is expressed in epidermis; periderm; pharynx; post-vent region; and sensory system. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:111983 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (45173416..45177396, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (44472118..44476085, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene mucin 13a, cell surface associated Neighboring gene novel protein containing SEA domains Neighboring gene novel protein containing SEA domains Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa Neighboring gene ecotropic viral integration site 5 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Methyl mercury suppresses the formation of the tail primordium in developing zebrafish embryos. Yang L, et al. Toxicol Sci, 2010 Jun. PMID 20181659
    2. UVB Irradiation Induced Cell Damage and Early Onset of Junbb Expression in Zebrafish. Chen RY, et al. Animals (Basel), 2020 Jun 25. PMID 32630437, Free PMC Article
    3. Functional analysis reveals no transcriptional role for the glucocorticoid receptor β-isoform in zebrafish. Chatzopoulou A, et al. Mol Cell Endocrinol, 2017 May 15. PMID 28242321
    4. Chronic reduction in cardiac output induces hypoxic signaling in larval zebrafish even at a time when convective oxygen transport is not required. Kopp R, et al. Physiol Genomics, 2010 Sep. PMID 20571107
    5. An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. Mohseny AB, et al. J Pathol, 2012 Jun. PMID 22297719

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC56382

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC550501

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017803.2 → NP_001017803.1  uncharacterized protein LOC550501 precursor

      See identical proteins and their annotated locations for NP_001017803.1

      Status: VALIDATED

      Source sequence(s)
      AL953855, EH452984
      UniProtKB/TrEMBL
      A0A8M1N5G3, Q567K3
      Related
      ENSDARP00000035524.5, ENSDART00000034549.7
      Conserved Domains (2) summary
      pfam03229
      Location:91 → 153
      Alpha_GJ; Alphavirus glycoprotein J
      pfam01390
      Location:170 → 261
      SEA; SEA domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      45173416..45177396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_213361.1: Suppressed sequence

      Description
      NM_213361.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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