lgals3bp.1 galectin 3 binding protein, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lgals3bp.1provided by ZNC
Official Full Name: galectin 3 binding protein, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2262
See related: Ensembl:ENSDARG00000040528 AllianceGenome:ZFIN:ZDB-GENE-040426-2262
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: lgals3bpb; zgc:77059
Summary: Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region and membrane. Is expressed in brain; hematopoietic cell; macrophage; optic tectum; and retina. Orthologous to human LGALS3BP (galectin 3 binding protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (57741933..57744289, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (57671409..57673765, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: galectin-3-binding protein B

Names: lectin galactoside-binding soluble 3-binding protein B; lectin, galactoside-binding, soluble, 3 binding protein b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212873.1 → NP_998038.1 galectin-3-binding protein B precursor

See identical proteins and their annotated locations for NP_998038.1

Status: PROVISIONAL

Source sequence(s)

BC066712

UniProtKB/Swiss-Prot

Q6NY73

Related

ENSDARP00000092605.2, ENSDART00000101829.4

Conserved Domains (4) summary

smart00225
Location:165 → 255

BTB; Broad-Complex, Tramtrack and Bric a brac

smart00875
Location:271 → 368

BACK; BTB And C-terminal Kelch

smart00202
Location:32 → 130

SR; Scavenger receptor Cys-rich

pfam00530
Location:36 → 131

SRCR; Scavenger receptor cysteine-rich domain