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    Banf2 BANF family member 2 [ Mus musculus (house mouse) ]

    Gene ID: 403171, updated on 12-May-2024

    Summary

    Official Symbol
    Banf2provided by MGI
    Official Full Name
    BANF family member 2provided by MGI
    Primary source
    MGI:MGI:2684961
    See related
    Ensembl:ENSMUSG00000037307 AllianceGenome:MGI:2684961
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Baf-L; Gm115; Baf-like; 4930517K23Rik
    Summary
    Predicted to enable DNA binding activity and identical protein binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleoplasm. Orthologous to human BANF2 (BANF family member 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 47.8) See more
    Orthologs
    NEW
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    Genomic context

    See Banf2 in Genome Data Viewer
    Location:
    2 G1; 2 70.91 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (143875022..143915899)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (144033102..144073979)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene destrin Neighboring gene predicted gene, 33804 Neighboring gene predicted gene, 54119 Neighboring gene ribosome binding protein 1 Neighboring gene STARR-seq mESC enhancer starr_05899 Neighboring gene STARR-positive B cell enhancer ABC_E513 Neighboring gene STARR-positive B cell enhancer ABC_E2050 Neighboring gene STARR-seq mESC enhancer starr_05901 Neighboring gene barrier to autointegration factor 2, opposite strand Neighboring gene STARR-positive B cell enhancer mm9_chr2:143918460-143918761 Neighboring gene STARR-positive B cell enhancer ABC_E1601 Neighboring gene predicted gene, 53188 Neighboring gene STARR-seq mESC enhancer starr_05904 Neighboring gene ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in chromosome organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in condensed chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    barrier-to-autointegration factor-like protein
    Names
    barrier to autointegration factor 2
    likely ortholog of H. sapiens Chromosome 20 open reading frame 179 (C20orf179)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044750.1NP_001038215.1  barrier-to-autointegration factor-like protein

      See identical proteins and their annotated locations for NP_001038215.1

      Status: VALIDATED

      Source sequence(s)
      BC049628
      Consensus CDS
      CCDS16813.1
      UniProtKB/Swiss-Prot
      Q8BVR0
      Related
      ENSMUSP00000105659.2, ENSMUST00000110032.2
      Conserved Domains (1) summary
      cl03803
      Location:489
      BAF; Barrier to autointegration factor
    2. NM_207275.2NP_997158.1  barrier-to-autointegration factor-like protein

      See identical proteins and their annotated locations for NP_997158.1

      Status: VALIDATED

      Source sequence(s)
      AL928891
      Consensus CDS
      CCDS16813.1
      UniProtKB/Swiss-Prot
      Q8BVR0
      Related
      ENSMUSP00000046219.3, ENSMUST00000037722.9
      Conserved Domains (1) summary
      cl03803
      Location:489
      BAF; Barrier to autointegration factor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      143875022..143915899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)