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    tdrd15 tudor domain containing 15 [ Danio rerio (zebrafish) ]

    Gene ID: 799498, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tdrd15provided by ZNC
    Official Full Name
    tudor domain containing 15provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041014-303
    See related
    Ensembl:ENSDARG00000014039 AllianceGenome:ZFIN:ZDB-GENE-041014-303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-214g8.1; si:dkeyp-93d12.1
    Summary
    Predicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be active in P granule. Orthologous to human TDRD15 (tudor domain containing 15). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human all
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    Genomic context

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    See tdrd15 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (42537603..42561740)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (42640505..42664630)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488687 Neighboring gene vestigial-like family member 2a Neighboring gene regulatory factor X, 6 Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene insulin-like growth factor 2 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Jiang L, et al. Cell, 2013 May 9. PMID 23663777, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in P granule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in piRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in P granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tudor domain-containing protein 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195281.1 → NP_001182210.1  tudor domain-containing protein 15

      See identical proteins and their annotated locations for NP_001182210.1

      Status: VALIDATED

      Source sequence(s)
      AL929119, BX000362
      UniProtKB/TrEMBL
      A0A8M1NXB8, Q5VSI4
      Related
      ENSDARP00000119878.1, ENSDART00000134066.4
      Conserved Domains (2) summary
      cd04508
      Location:525 → 571
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      pfam00567
      Location:468 → 590
      TUDOR; Tudor domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      42537603..42561740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170191.5 → XP_005170248.1  tudor domain-containing protein 15 isoform X1

      See identical proteins and their annotated locations for XP_005170248.1

      UniProtKB/TrEMBL
      A0A8M1NXB8, Q5VSI4
      Conserved Domains (2) summary
      cd04508
      Location:525 → 571
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      pfam00567
      Location:468 → 590
      TUDOR; Tudor domain
    Nucleotide Protein
    Heading Accession and Version

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