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    zgc:152948 zgc:152948 [ Danio rerio (zebrafish) ]

    Gene ID: 767666, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:152948provided by ZNC
    Official Full Name
    zgc:152948provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-364
    See related
    Ensembl:ENSDARG00000071487 AllianceGenome:ZFIN:ZDB-GENE-060929-364
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C18orf54 (chromosome 18 open reading frame 54). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zgc:152948 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (1629722..1644414, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (1603788..1618590, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 91 Neighboring gene vitelline membrane outer layer 1 homolog b Neighboring gene ferrochelatase Neighboring gene one cut homeobox 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152948

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    lung adenoma susceptibility protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076605.1 → NP_001070073.1  lung adenoma susceptibility protein 2

      See identical proteins and their annotated locations for NP_001070073.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124187
      UniProtKB/TrEMBL
      Q08CL4
      Related
      ENSDARP00000096514.4, ENSDART00000105736.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      1629722..1644414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170247.4 → XP_005170304.1  lung adenoma susceptibility protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8M2BI25

    2. XM_005170246.4 → XP_005170303.1  lung adenoma susceptibility protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BHL2
      Related
      ENSDARP00000110918.3, ENSDART00000124904.4

    3. XM_005170245.4 → XP_005170302.1  lung adenoma susceptibility protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHL8

    4. XM_068215930.1 → XP_068072031.1  lung adenoma susceptibility protein 2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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