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    ttc34 tetratricopeptide repeat domain 34 [ Danio rerio (zebrafish) ]

    Gene ID: 557001, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ttc34provided by ZNC
    Official Full Name
    tetratricopeptide repeat domain 34provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-266
    See related
    AllianceGenome:ZFIN:ZDB-GENE-140106-266
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human TTC34 (tetratricopeptide repeat domain 34). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ttc34 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (20784225..20801058)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (20857851..20874715)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 362b Neighboring gene si:ch211-112c15.8 Neighboring gene zgc:154075 Neighboring gene ERBB receptor feedback inhibitor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 34
    Names
    zmp:0000001306

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      20784225..20801058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679957.9 → XP_685049.4  tetratricopeptide repeat protein 34

      See identical proteins and their annotated locations for XP_685049.4

      UniProtKB/TrEMBL
      A0A8N7TAJ5
      Conserved Domains (2) summary
      sd00006
      Location:693 → 722
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:694 → 755
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

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