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    LOC4340027 40S ribosomal protein S20-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340027, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340027
    Gene description
    40S ribosomal protein S20-like
    Locus tag
    OSNPB_060134000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    rps20; OsJ_20022
    Expression
    Ubiquitous expression in flower buds (RPKM 173.4), flowers (RPKM 134.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1977360..1979354, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1820084..1822082, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transketolase, chloroplastic Neighboring gene 3-phosphoshikimate 1-carboxyvinyltransferase 2 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene uncharacterized LOC9267091 Neighboring gene uncharacterized LOC107277920

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The primary structure of two proteins from the small ribosomal subunit of rice. Nishi R, et al. Biochim Biophys Acta, 1993 Oct 19. PMID 8218399
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS10
    Names
    40S ribosomal protein S20
    40S subunit ribosomal protein
    LOC_Os06g04290
    P0001H02.5-1
    P0679C08.43-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402787.1 → NP_001389716.1  small ribosomal subunit protein uS10

      Status: VALIDATED

      Source sequence(s)
      CF291835, CI742613
      UniProtKB/Swiss-Prot
      P35686, Q0DEU6, Q5VNV9, Q7GC39
      UniProtKB/TrEMBL
      A2Y8Y0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1977360..1979354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P35686.2 GenPept UniProtKB/Swiss-Prot:P35686

    Gene LinkOut

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