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    LOC4333117 probable 6-phosphogluconolactonase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333117, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333117
    Gene description
    probable 6-phosphogluconolactonase 1
    Locus tag
    OSNPB_030416500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_010814
    Expression
    Broad expression in flower buds (RPKM 7.4), mature seeds (RPKM 5.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17743696..17748632, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17288043..17293117, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 5 Neighboring gene COBRA-like protein 2 Neighboring gene uncharacterized LOC107280421 Neighboring gene low molecular mass early light-inducible protein HV90, chloroplastic-like Neighboring gene cytochrome P450 78A5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphogluconolactonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 6-phosphogluconolactonase 1
    Names
    6PGL 1
    LOC_Os03g30300
    OSJNBb0059G13.23
    NP_001404611.1
    XP_025880030.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417682.1 → NP_001404611.1  probable 6-phosphogluconolactonase 1

      Status: VALIDATED

      Source sequence(s)
      AK103024, CI214238, CI525841, CI594334, CI743284
      UniProtKB/Swiss-Prot
      A3AJ42, B7ETZ6, Q75IV7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      17743696..17748632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024245.2 → XP_025880030.1  probable 6-phosphogluconolactonase 1 isoform X1

      Conserved Domains (1) summary
      PLN02360
      Location:27 → 294
      PLN02360; probable 6-phosphogluconolactonase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75IV7.1 GenPept UniProtKB/Swiss-Prot:Q75IV7

    Gene LinkOut

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