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    LOC4347871 28 kDa ribonucleoprotein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347871, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347871
    Gene description
    28 kDa ribonucleoprotein, chloroplastic
    Locus tag
    OSNPB_090565200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 306.1), leaves after flowering (RPKM 144.1) and 4 other tissues See more
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    Genomic context

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    See LOC4347871 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22505029..22507578, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene thiol protease SEN102 Neighboring gene uncharacterized LOC107276108 Neighboring gene E3 ubiquitin-protein ligase RGLG2 Neighboring gene uncharacterized LOC107277576

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    28 kDa ribonucleoprotein, chloroplastic
    Names
    OSJNBa0042B15.31
    OSJNBa0070E11.5
    Os09g0565200
    putative nucleic acid-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22505029..22507578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756127.1 → XP_015611613.1  28 kDa ribonucleoprotein, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XQG6, B8BEL6, Q0IZK5, Q650W6
      Conserved Domains (2) summary
      cd21608
      Location:238 → 313
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cl17169
      Location:144 → 223
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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