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    LOC4339808 calcium permeable stress-gated cation channel 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339808, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339808
    Gene description
    calcium permeable stress-gated cation channel 1
    Locus tag
    OSNPB_050594700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339808 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29794776..29802879)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29608177..29616399)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339807 Neighboring gene uncharacterized LOC107280890 Neighboring gene 26S proteasome regulatory subunit RPN13 Neighboring gene sm-like protein LSM8 Neighboring gene pathogenesis-related protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium permeable stress-gated cation channel 1
    Names
    Os05g0594700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29794776..29802879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784518.3 → XP_015640004.1  calcium permeable stress-gated cation channel 1

      UniProtKB/TrEMBL
      A0A097NUQ8, A2Y857, B9FLX6, Q0DFF1, Q5TKG1
      Conserved Domains (2) summary
      COG5594
      Location:10 → 676
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:370 → 641
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
    Nucleotide Protein
    Heading Accession and Version

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