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    LOC4327493 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327493, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327493
    Gene description
    2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Locus tag
    OSNPB_010817700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 348.4), flower buds (RPKM 338.3) and 6 other tissues See more
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    Genomic context

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    See LOC4327493 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35411328..35415032)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34804226..34808038)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cation/H(+) antiporter 15 Neighboring gene protein LURP-one-related 8 Neighboring gene uncharacterized LOC4327494 Neighboring gene protein PIN-LIKES 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Names
    B1148D12.28
    Os01g0817700
    P0454H12.17
    phospoglycerate mutase
    putative phosphoglycerate mutase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35411328..35415032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309429.1 → XP_066165526.1  2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform X1

      UniProtKB/TrEMBL
      B8ABA7

    2. XM_066309432.1 → XP_066165529.1  2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform X2

      UniProtKB/TrEMBL
      B8ABA7, Q0JI89, Q5QMK7

    3. XM_066309427.1 → XP_066165524.1  2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform X1

      UniProtKB/TrEMBL
      B8ABA7

    4. XM_015757505.3 → XP_015612991.1  2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform X2

      UniProtKB/TrEMBL
      B8ABA7, Q0JI89, Q5QMK7
      Conserved Domains (1) summary
      PLN02538
      Location:1 → 556
      PLN02538; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Nucleotide Protein
    Heading Accession and Version

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