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    LOC4340951 phosphatidylinositol 4-kinase gamma 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340951, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340951
    Gene description
    phosphatidylinositol 4-kinase gamma 4-like
    Locus tag
    OSNPB_060340600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1294_G12.30-1
    Expression
    Ubiquitous expression in roots after flowering (RPKM 217.7), leaves after flowering (RPKM 210.1) and 6 other tissues See more
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    Genomic context

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    See LOC4340951 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13786786..13789714, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13602067..13604935, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356957 Neighboring gene uncharacterized LOC9266525 Neighboring gene late embryogenesis abundant protein D-34 Neighboring gene uncharacterized LOC136356967 Neighboring gene uncharacterized LOC4340954

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol 4-kinase gamma 4-like
    Names
    Os06g0340600
    P0428A03.16-1
    putative ubiquitin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13786786..13789714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787854.2 → XP_015643340.1  phosphatidylinositol 4-kinase gamma 4-like

      UniProtKB/TrEMBL
      A2YCK4, A3BBF5, Q5Z885, Q5ZAE4
      Conserved Domains (4) summary
      smart00213
      Location:119 → 189
      UBQ; Ubiquitin homologues
      pfam00240
      Location:53 → 113
      ubiquitin; Ubiquitin family
      pfam00454
      Location:275 → 514
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
      cl00155
      Location:125 → 191
      UBQ; Ubiquitin-like proteins

    2. XM_015787851.3 → XP_015643337.1  phosphatidylinositol 4-kinase gamma 4-like

      UniProtKB/TrEMBL
      A2YCK4, A3BBF5, Q5Z885, Q5ZAE4
      Conserved Domains (4) summary
      smart00213
      Location:119 → 189
      UBQ; Ubiquitin homologues
      pfam00240
      Location:53 → 113
      ubiquitin; Ubiquitin family
      pfam00454
      Location:275 → 514
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
      cl00155
      Location:125 → 191
      UBQ; Ubiquitin-like proteins

    3. XM_015787853.3 → XP_015643339.1  phosphatidylinositol 4-kinase gamma 4-like

      UniProtKB/TrEMBL
      A2YCK4, A3BBF5, Q5Z885, Q5ZAE4
      Conserved Domains (4) summary
      smart00213
      Location:119 → 189
      UBQ; Ubiquitin homologues
      pfam00240
      Location:53 → 113
      ubiquitin; Ubiquitin family
      pfam00454
      Location:275 → 514
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
      cl00155
      Location:125 → 191
      UBQ; Ubiquitin-like proteins

    4. XM_015787852.3 → XP_015643338.1  phosphatidylinositol 4-kinase gamma 4-like

      UniProtKB/TrEMBL
      A2YCK4, A3BBF5, Q5Z885, Q5ZAE4
      Conserved Domains (4) summary
      smart00213
      Location:119 → 189
      UBQ; Ubiquitin homologues
      pfam00240
      Location:53 → 113
      ubiquitin; Ubiquitin family
      pfam00454
      Location:275 → 514
      PI3_PI4_kinase; Phosphatidylinositol 3- and 4-kinase
      cl00155
      Location:125 → 191
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
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