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    LOC4347952 uncharacterized LOC4347952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347952, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347952
    Gene description
    uncharacterized LOC4347952
    Locus tag
    OSNPB_100104700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 9.7), leaves after flowering (RPKM 9.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (365859..372022, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (360605..367043, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene notchless protein homolog Neighboring gene proline-rich receptor-like protein kinase PERK4 Neighboring gene DNA (cytosine-5)-methyltransferase CMT3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347952
    Names
    Os10g0104700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      365859..372022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759288.3 → XP_015614774.1  uncharacterized protein LOC4347952 isoform X2

      UniProtKB/TrEMBL
      A2Z4D0, Q33BI5
      Conserved Domains (4) summary
      cd06410
      Location:10 → 101
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      smart00575
      Location:708 → 733
      ZnF_PMZ; plant mutator transposase zinc finger
      pfam03108
      Location:247 → 313
      DBD_Tnp_Mut; MuDR family transposase
      pfam10551
      Location:459 → 543
      MULE; MULE transposase domain

    2. XM_066304822.1 → XP_066160919.1  uncharacterized protein LOC4347952 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XRZ4, Q0IZD0
    Nucleotide Protein
    Heading Accession and Version

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