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    LOC4336870 cell division cycle 20.2, cofactor of APC complex [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336870, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4336870
    Gene description
    cell division cycle 20.2, cofactor of APC complex
    Locus tag
    OSNPB_040599800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.4), flowers (RPKM 7.0) and 6 other tissues See more
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    Genomic context

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    See LOC4336870 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30774062..30776940)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30267815..30270708)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266263 Neighboring gene uncharacterized LOC4336869 Neighboring gene clathrin interactor EPSIN 1 Neighboring gene myb family transcription factor PHL11 Neighboring gene uncharacterized LOC4336873

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables anaphase-promoting complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin ligase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anaphase-promoting complex-dependent catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of anaphase-promoting complex-dependent catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell division cycle 20.2, cofactor of APC complex
    Names
    Os04g0599800
    putative WD repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30774062..30776940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779919.3 → XP_015635405.1  cell division cycle 20.2, cofactor of APC complex isoform X1

      UniProtKB/TrEMBL
      A0A0N7KJM4, Q0JAG9
      Conserved Domains (2) summary
      COG2319
      Location:161 → 478
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:197 → 235
      7WD40; WD40 repeat [structural motif]

    2. XM_015779920.3 → XP_015635406.1  cell division cycle 20.2, cofactor of APC complex isoform X2

      UniProtKB/TrEMBL
      B8ATM4, B9FCA5, Q7XPT3
      Conserved Domains (2) summary
      COG2319
      Location:161 → 448
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:197 → 235
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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