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    LOC4349408 trihelix transcription factor ASIL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349408, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4349408
    Gene description
    trihelix transcription factor ASIL1
    Locus tag
    OSNPB_100564200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349408 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22283943..22285917)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein PEPPER Neighboring gene mediator of RNA polymerase II transcription subunit 31 Neighboring gene 60S ribosomal protein L27-3 Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trihelix transcription factor ASIL1
    Names
    Os10g0564200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22283943..22285917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757285.2 → XP_015612771.1  trihelix transcription factor ASIL1

      UniProtKB/TrEMBL
      A0A5S6R9J4, A2ZAB2, Q7XC32, Q9AY44
      Conserved Domains (1) summary
      pfam13837
      Location:51 → 114
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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