U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4324802 laccase-7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324802, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4324802
    Gene description
    laccase-7-like
    Locus tag
    OSNPB_010850700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LAC7; OsJ_04091; OsJ_003987
    Expression
    Biased expression in flowers (RPKM 12.9), roots before flowering (RPKM 6.2) and 3 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4324802 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37248628..37253476)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36622795..36627664)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB1 Neighboring gene laccase-6 Neighboring gene laccase-8 Neighboring gene heme-binding-like protein At3g10130, chloroplastic

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in lignin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    laccase-7
    Names
    Benzenediol:oxygen oxidoreductase 7
    Diphenol oxidase 7
    LOC_Os01g63190
    P0414E03.33-1
    P0414E03.33-2
    P0529H11.22-1
    P0529H11.22-2
    Urishiol oxidase 7
    laccase LAC5-4-like protein
    putative laccase LAC5-4
    NP_001392368.1
    NP_001392369.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405439.1NP_001392368.1  laccase-7 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AK065154, CB655042, CI330462, CI579325
      UniProtKB/Swiss-Prot
      A2ZZL5, B7F296, Q5N7B4
      UniProtKB/TrEMBL
      B8ACE7
    2. NM_001405440.1NP_001392369.1  laccase-7 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK061816, CB655042, CI330462, CI579325
      UniProtKB/TrEMBL
      Q5N7B3, Q5N9S6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37248628..37253476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)